AI Medical Compendium Journal:
BMC medical genomics

Showing 11 to 20 of 52 articles

Clinical feature-related single-base substitution sequence signatures identified with an unsupervised machine learning approach.

BMC medical genomics
BACKGROUND: Mutation processes leave different signatures in genes. For single-base substitutions, previous studies have suggested that mutation signatures are not only reflected in mutation bases but also in neighboring bases. However, because of th...

Are we there yet? A machine learning architecture to predict organotropic metastases.

BMC medical genomics
BACKGROUND & AIMS: Cancer metastasis into distant organs is an evolutionarily selective process. A better understanding of the driving forces endowing proliferative plasticity of tumor seeds in distant soils is required to develop and adapt better tr...

EARN: an ensemble machine learning algorithm to predict driver genes in metastatic breast cancer.

BMC medical genomics
BACKGROUND: Today, there are a lot of markers on the prognosis and diagnosis of complex diseases such as primary breast cancer. However, our understanding of the drivers that influence cancer aggression is limited.

Network-based drug sensitivity prediction.

BMC medical genomics
BACKGROUND: Drug sensitivity prediction and drug responsive biomarker selection on high-throughput genomic data is a critical step in drug discovery. Many computational methods have been developed to serve this purpose including several deep neural n...

Identification of biological correlates associated with respiratory failure in COVID-19.

BMC medical genomics
BACKGROUND: Coronavirus disease 2019 (COVID-19) is a global public health concern. Recently, a genome-wide association study (GWAS) was performed with participants recruited from Italy and Spain by an international consortium group.

Identification of contributing genes of Huntington's disease by machine learning.

BMC medical genomics
BACKGROUND: Huntington's disease (HD) is an inherited disorder caused by the polyglutamine (poly-Q) mutations of the HTT gene results in neurodegeneration characterized by chorea, loss of coordination, cognitive decline. However, HD pathogenesis is s...

A random forest based biomarker discovery and power analysis framework for diagnostics research.

BMC medical genomics
BACKGROUND: Biomarker identification is one of the major and important goal of functional genomics and translational medicine studies. Large scale -omics data are increasingly being accumulated and can provide vital means for the identification of bi...

TNFPred: identifying tumor necrosis factors using hybrid features based on word embeddings.

BMC medical genomics
BACKGROUND: Cytokines are a class of small proteins that act as chemical messengers and play a significant role in essential cellular processes including immunity regulation, hematopoiesis, and inflammation. As one important family of cytokines, tumo...

Transcription factor expression as a predictor of colon cancer prognosis: a machine learning practice.

BMC medical genomics
BACKGROUND: Colon cancer is one of the leading causes of cancer deaths in the USA and around the world. Molecular level characters, such as gene expression levels and mutations, may provide profound information for precision treatment apart from path...

Cancer gene expression profiles associated with clinical outcomes to chemotherapy treatments.

BMC medical genomics
BACKGROUND: Machine learning (ML) methods still have limited applicability in personalized oncology due to low numbers of available clinically annotated molecular profiles. This doesn't allow sufficient training of ML classifiers that could be used f...