AIMC Topic: Cell Membrane

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DeepContact: High-throughput quantification of membrane contact sites based on electron microscopy imaging.

The Journal of cell biology
Membrane contact site (MCS)-mediated organelle interactions play essential roles in the cell. Quantitative analysis of MCSs reveals vital clues for cellular responses under various physiological and pathological conditions. However, an efficient tool...

Biological Membrane-Penetrating Peptides: Computational Prediction and Applications.

Frontiers in cellular and infection microbiology
Peptides comprise a versatile class of biomolecules that present a unique chemical space with diverse physicochemical and structural properties. Some classes of peptides are able to naturally cross the biological membranes, such as cell membrane and ...

A novel deep learning-based 3D cell segmentation framework for future image-based disease detection.

Scientific reports
Cell segmentation plays a crucial role in understanding, diagnosing, and treating diseases. Despite the recent success of deep learning-based cell segmentation methods, it remains challenging to accurately segment densely packed cells in 3D cell memb...

Label-free multiplexed microtomography of endogenous subcellular dynamics using generalizable deep learning.

Nature cell biology
Simultaneous imaging of various facets of intact biological systems across multiple spatiotemporal scales is a long-standing goal in biology and medicine, for which progress is hindered by limits of conventional imaging modalities. Here we propose us...

Using molecular dynamics simulations to prioritize and understand AI-generated cell penetrating peptides.

Scientific reports
Cell-penetrating peptides have important therapeutic applications in drug delivery, but the variety of known cell-penetrating peptides is still limited. With a promise to accelerate peptide development, artificial intelligence (AI) techniques includi...

Neural network strategies for plasma membrane selection in fluorescence microscopy images.

Biophysical journal
In recent years, there has been an explosion of fluorescence microscopy studies of live cells in the literature. The analysis of the images obtained in these studies often requires labor-intensive manual annotation to extract meaningful information. ...

A machine learning approach to estimation of phase diagrams for three-component lipid mixtures.

Biochimica et biophysica acta. Biomembranes
The plasma membrane of eukaryotic cells is commonly believed to contain ordered lipid domains. The interest in understanding the origin of such domains has led to extensive studies on the phase behavior of mixed lipid systems. Three-component phase d...

Computational analysis of morphological and molecular features in gastric cancer tissues.

Cancer medicine
Biological morphologies of cells and tissues represent their physiological and pathological conditions. The importance of quantitative assessment of morphological information has been highly recognized in clinical diagnosis and therapeutic strategies...

An in vitro assay and artificial intelligence approach to determine rate constants of nanomaterial-cell interactions.

Scientific reports
In vitro assays and simulation technologies are powerful methodologies that can inform scientists of nanomaterial (NM) distribution and fate in humans or pre-clinical species. For small molecules, less animal data is often needed because there are a ...

Engineering approaches for characterizing soft tissue mechanical properties: A review.

Clinical biomechanics (Bristol, Avon)
From cancer diagnosis to detailed characterization of arterial wall biomechanics, the elastic property of tissues is widely studied as an early sign of disease onset. The fibrous structural features of tissues are a direct measure of its health and f...