AIMC Topic: Deep Learning

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Combining diffusion and transformer models for enhanced promoter synthesis and strength prediction in deep learning.

mSystems
UNLABELLED: In the field of synthetic biology, the engineering of synthetic promoters that outperform their natural counterparts is of paramount importance, which can optimize the expression of exogenous genes, enhance the efficiency of metabolic pat...

CPPCGM: A Highly Efficient Sequence-Based Tool for Simultaneously Identifying and Generating Cell-Penetrating Peptides.

Journal of chemical information and modeling
Cell-penetrating peptides (CPPs) are usually short oligopeptides with 5-30 amino acid residues. CPPs have been proven as important drug delivery vehicles into cells through different mechanisms, demonstrating their potential as therapeutic candidates...

Unsupervised Learning of Progress Coordinates during Weighted Ensemble Simulations: Application to NTL9 Protein Folding.

Journal of chemical theory and computation
A major challenge for many rare-event sampling strategies is the identification of progress coordinates that capture the slowest relevant motions. Machine-learning methods that can identify progress coordinates in an unsupervised manner have therefor...

Identification of heart failure subtypes using transformer-based deep learning modelling: a population-based study of 379,108 individuals.

EBioMedicine
BACKGROUND: Heart failure (HF) is a complex syndrome with varied presentations and progression patterns. Traditional classification systems based on left ventricular ejection fraction (LVEF) have limitations in capturing the heterogeneity of HF. We a...

Reducing hepatitis C diagnostic disparities with a fully automated deep learning-enabled microfluidic system for HCV antigen detection.

Science advances
Viral hepatitis remains a major global health issue, with chronic hepatitis B (HBV) and hepatitis C (HCV) causing approximately 1 million deaths annually, primarily due to liver cancer and cirrhosis. More than 1.5 million people contract HCV each yea...

MAL-Net: A Multi-Label Deep Learning Framework Integrating LSTM and Multi-Head Attention for Enhanced Classification of IgA Nephropathy Subtypes Using Clinical Sensor Data.

Sensors (Basel, Switzerland)
BACKGROUND: IgA nephropathy (IgAN) is a leading cause of renal failure, characterized by significant clinical and pathological heterogeneity. Accurate subtype classification remains challenging due to overlapping clinical manifestations and the multi...

Stroma and lymphocytes identified by deep learning are independent predictors for survival in pancreatic cancer.

Scientific reports
Pancreatic ductal adenocarcinoma (PDAC) is one of the most lethal cancers known to humans. However, not all patients fare equally poor survival, and a minority of patients even survives advanced disease for months or years. Thus, there is a clinical ...

EEG detection and recognition model for epilepsy based on dual attention mechanism.

Scientific reports
In the field of clinical neurology, automated detection of epileptic seizures based on electroencephalogram (EEG) signals has the potential to significantly accelerate the diagnosis of epilepsy. This rapid and accurate diagnosis enables doctors to pr...

Using Deep Learning to Perform Automatic Quantitative Measurement of Masseter and Tongue Muscles in Persons With Dementia: Cross-Sectional Study.

JMIR aging
BACKGROUND: Sarcopenia (loss of muscle mass and strength) increases adverse outcomes risk and contributes to cognitive decline in older adults. Accurate methods to quantify muscle mass and predict adverse outcomes, particularly in older persons with ...

Mouse-Geneformer: A deep learning model for mouse single-cell transcriptome and its cross-species utility.

PLoS genetics
Deep learning techniques are increasingly utilized to analyze large-scale single-cell RNA sequencing (scRNA-seq) data, offering valuable insights from complex transcriptome datasets. Geneformer, a pre-trained model using a Transformer Encoder archite...