AIMC Topic: Neoplasms

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Regulators of homologous recombination deficiency identified by machine learning using somatic multi-omics data.

Life science alliance
Homologous recombination deficiency (HRD) is a critical biomarker for guiding targeted therapies, yet the full range of somatic alterations driving HRD across cancers remains incompletely characterized. Here, we present a tumor-agnostic machine learn...

Cross-platform multi-cancer histopathology classification using local-window vision transformers.

Scientific reports
Cancer remains one of the leading causes of global mortality, with lung, colon, skin, and breast cancers contributing significantly to the disease burden. Accurate and timely classification of histopathological images is critical for effective diagno...

A multi-representation deep-learning framework for accurate multicancer classification.

Journal of translational medicine
BACKGROUND: Accurate multicancer classification constitutes a cornerstone of modern oncology, offering critical insights into diagnosis, therapeutic decision-making, and prognostication. Numerous existing approaches, however, remain restricted to lim...

Biologically explainable multi-omics feature demonstrates greater learning potential by identifying tissue of origin, stages, and subtypes for pan-cancer classification.

Scientific reports
Cancer is a complex disease characterized by uncontrolled cell growth, which can invade surrounding tissues and spread to distant organs. Most of the conventional methods of diagnosis fails to identify the primary organ when cancer spreads to other o...

Drug resistance in cancer: molecular mechanisms and emerging treatment strategies.

Molecular biomedicine
Therapeutic resistance remains a defining challenge in oncology, limiting the durability of current therapies and contributing to disease relapse and poor patient outcomes. This review systematically integrates recent progress in understanding the mo...

Named Entity Recognition for Chinese Cancer Electronic Health Records-Development and Evaluation of a Domain-Specific BERT Model: Quantitative Study.

JMIR medical informatics
BACKGROUND: The unstructured data of Chinese cancer electronic health records (EHRs) contains valuable medical expertise. Accurate medical entity recognition is crucial for building a medical-assisted decision system. Named entity recognition (NER) i...

Evaluation of Cancer Survivors' Experience of Using AI-Based Conversational Tools: Qualitative Study.

JMIR cancer
BACKGROUND: Cancer survivorship is a complicated, chronic, and long-lasting experience, causing uncertainty and a wide range of physical and emotional health concerns. Due to the complexity of cancer, patients often seek out multiple sources of healt...

Selectivity Approaches in Therapeutic Antibody Design.

Journal of medicinal chemistry
Protein therapeutics, particularly antibody-based therapies, have emerged as a cornerstone in modern disease treatment, offering key advantages over small molecules, including superior target specificity, longer half-life, and expanded target accessi...

Refining cancer prediction with DNA sequencing and combined machine learning approaches.

Scientific reports
A high-accuracy DNA-based cancer risk predictor was developed by blending Logistic Regression with Gaussian Naive Bayes, and its hyperparameters were optimized via grid search. Five cancer types (BRCA1, KIRC, COAD, LUAD, PRAD) were classified in a co...

OmniCLIC: A Unified Omics Contrastive Learning Framework for Effective Integration and Classification of Multiomics Data.

Journal of chemical information and modeling
Integrating multiomics data for cancer subtype classification remains a critical yet challenging task due to the high dimensionality, heterogeneity, and limited interpretability of omics features. To address these limitations, we propose OmniCLIC, a ...