AIMC Topic: Software

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Software technical debt prediction based on complex software networks.

PloS one
Technical debt prediction (TDP) is crucial for the long-term maintainability of software. In the literature, many machine-learning based TDP models have been proposed; they used TD-related metrics as input features for machine-learning classifiers to...

SMART MRS: A Simulated MEGA-PRESS ARTifacts toolbox for GABA-edited MRS.

Magnetic resonance in medicine
PURPOSE: To create a Python-based toolbox to simulate commonly occurring artifacts for single voxel gamma-aminobutyric acid (GABA)-edited MRS data.

PhenoDP: leveraging deep learning for phenotype-based case reporting, disease ranking, and symptom recommendation.

Genome medicine
BACKGROUND: Current phenotype-based diagnostic tools often struggle with accurate disease prioritization due to incomplete phenotypic data and the complexity of rare disease presentations. Additionally, they lack the ability to generate patient-cente...

A descriptor-free machine learning framework to improve antigen discovery for bacterial pathogens.

PloS one
Identifying protective antigens (PAs), i.e., targets for bacterial vaccines, is challenging as conducting in-vivo tests at the proteome scale is impractical. Reverse Vaccinology (RV) aids in narrowing down the pool of candidates through computational...

Digital removal of dermal denticle layer using geometric AI from 3D CT scans of shark craniofacial structures enhances anatomical precision.

Scientific reports
Craniofacial morphometrics in sharks provide crucial insights into evolutionary history, geographical variation, sexual dimorphism, and developmental patterns. However, the fragile cartilaginous nature of shark craniofacial skeleton poses significant...

cfDNAFE: Comprehensively extracting multi-omics features of cell-free DNA for noninvasive diagnosis.

Methods (San Diego, Calif.)
The tissues-of-origin of circulating cell-free DNA (cfDNA) holds great promise for non-invasive diagnosing cancers, monitoring allograft rejection, and prenatal testing. Many features for inferring the tissues-of-origin of cfDNAs are being revealed f...

Comparative analysis of AI chatbot (ChatGPT-4.0 and Microsoft Copilot) and expert responses to common orthodontic questions: patient and orthodontist evaluations.

BMC oral health
OBJECTIVE: The aim of this study was to evaluate the adequacy of responses provided by experts and artificial intelligence-based chatbots (ChatGPT-4.0 and Microsoft Copilot) to frequently asked orthodontic questions, utilizing scores assigned by pati...

READRetro web: A user-friendly platform for predicting plant natural product biosynthesis.

Molecules and cells
Natural products (NPs), a fundamental class of bioactive molecules with broad applicability, are valuable sources in pharmaceutical research and drug discovery. Despite their significance, the large-scale production of NPs is often limited by their a...

Application research of artificial intelligence software in the analysis of thyroid nodule ultrasound image characteristics.

PloS one
Thyroid nodule, as a common clinical endocrine disease, has become increasingly prevalent worldwide. Ultrasound, as the premier method of thyroid imaging, plays an important role in accurately diagnosing and managing thyroid nodules. However, there i...

AMPGen: an evolutionary information-reserved and diffusion-driven generative model for de novo design of antimicrobial peptides.

Communications biology
The rapid advancement of artificial intelligence (AI) has enabled de novo design of functional proteins, circumventing the reliance on natural templates or sequencing databases. However, current protein design models are ineffective in generating pro...