AIMC Topic: Software

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Distributed Denial of Services (DDoS) attack detection in SDN using Optimizer-equipped CNN-MLP.

PloS one
Software-Defined Networks (SDN) provides more control and network operation over a network infrastructure as an emerging and revolutionary paradigm in networking. Operating the many network applications and preserving the network services and functio...

SEPO-FI: Deep-learning based software to calculate fusion index of muscle cells.

Computers in biology and medicine
The fusion index is a critical metric for quantitatively assessing the transformation of in vitro muscle cells into myotubes in the biological and medical fields. Traditional methods for calculating this index manually involve the labor-intensive cou...

GraphPhos: Predict Protein-Phosphorylation Sites Based on Graph Neural Networks.

International journal of molecular sciences
Phosphorylation is one of the most common protein post-translational modifications. The identification of phosphorylation sites serves as the cornerstone for protein-phosphorylation-related research. This paper proposes a protein-phosphorylation site...

Automated vs manual cardiac MRI planning: a single-center prospective evaluation of reliability and scan times.

European radiology
OBJECTIVES: Evaluating the impact of an AI-based automated cardiac MRI (CMR) planning software on procedure errors and scan times compared to manual planning alone.

DisDock: A Deep Learning Method for Metal Ion-Protein Redocking.

Proteins
The structures of metalloproteins are essential for comprehending their functions and interactions. The breakthrough of AlphaFold has made it possible to predict protein structures with experimental accuracy. However, the type of metal ion that a met...

PeptideForest: Semisupervised Machine Learning Integrating Multiple Search Engines for Peptide Identification.

Journal of proteome research
The first step in bottom-up proteomics is the assignment of measured fragmentation mass spectra to peptide sequences, also known as peptide spectrum matches. In recent years novel algorithms have pushed the assignment to new heights; unfortunately, d...

I2Bot: an open-source tool for multi-modal and embodied simulation of insect navigation.

Journal of the Royal Society, Interface
Achieving a comprehensive understanding of animal intelligence demands an integrative approach that acknowledges the interplay between an organism's brain, body and environment. Insects, despite their limited computational resources, demonstrate rema...

Evaluation of AI-based auto-contouring tools in radiotherapy: A single-institution study.

Journal of applied clinical medical physics
BACKGROUND: Accurate delineation of organs at risk (OARs) is crucial yet time-consuming in the radiotherapy treatment planning workflow. Modern artificial intelligence (AI) technologies had made automation of OAR contouring feasible. This report deta...

iDIA-QC: AI-empowered data-independent acquisition mass spectrometry-based quality control.

Nature communications
Quality control (QC) in mass spectrometry (MS)-based proteomics is mainly based on data-dependent acquisition (DDA) analysis of standard samples. Here, we collect 2754 files acquired by data independent acquisition (DIA) and paired 2638 DDA files fro...

AI-based assessment of longitudinal multiple sclerosis MRI: Strengths and weaknesses in clinical practice.

European journal of radiology
OBJECTIVES: In Multiple Sclerosis (MS) cerebral MRI is essential for disease and treatment monitoring. For this purpose, software solutions are available to support the radiologist with image interpretation and reporting of follow up imaging. Aim of ...