AIMC Topic: Software

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Use of deep learning to develop continuous-risk models for adverse event prediction from electronic health records.

Nature protocols
Early prediction of patient outcomes is important for targeting preventive care. This protocol describes a practical workflow for developing deep-learning risk models that can predict various clinical and operational outcomes from structured electron...

Neural network strategies for plasma membrane selection in fluorescence microscopy images.

Biophysical journal
In recent years, there has been an explosion of fluorescence microscopy studies of live cells in the literature. The analysis of the images obtained in these studies often requires labor-intensive manual annotation to extract meaningful information. ...

Computational generation of proteins with predetermined three-dimensional shapes using ProteinSolver.

STAR protocols
Computational generation of new proteins with a predetermined three-dimensional shape and computational optimization of existing proteins while maintaining their shape are challenging problems in structural biology. Here, we present a protocol that u...

Cheetah: A Computational Toolkit for Cybergenetic Control.

ACS synthetic biology
Advances in microscopy, microfluidics, and optogenetics enable single-cell monitoring and environmental regulation and offer the means to control cellular phenotypes. The development of such systems is challenging and often results in bespoke setups ...

Assessing the Outbreak Risk of Epidemics Using Fuzzy Evidential Reasoning.

Risk analysis : an official publication of the Society for Risk Analysis
Epidemic diseases (EDs) present a significant but challenging risk endangering public health, evidenced by the outbreak of COVID-19. Compared to other risks affecting public health such as flooding, EDs attract little attention in terms of risk asses...

Detecting protein and DNA/RNA structures in cryo-EM maps of intermediate resolution using deep learning.

Nature communications
An increasing number of density maps of macromolecular structures, including proteins and DNA/RNA complexes, have been determined by cryo-electron microscopy (cryo-EM). Although lately maps at a near-atomic resolution are routinely reported, there ar...

Artificial intelligence in radiology: 100 commercially available products and their scientific evidence.

European radiology
OBJECTIVES: Map the current landscape of commercially available artificial intelligence (AI) software for radiology and review the availability of their scientific evidence.

PCprophet: a framework for protein complex prediction and differential analysis using proteomic data.

Nature methods
Despite the availability of methods for analyzing protein complexes, systematic analysis of complexes under multiple conditions remains challenging. Approaches based on biochemical fractionation of intact, native complexes and correlation of protein ...