AIMC Topic: Terminology as Topic

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A hierarchical deep learning based approach for multi-functional enzyme classification.

Protein science : a publication of the Protein Society
Enzymes are critical proteins in every organism. They speed up essential chemical reactions, help fight diseases, and have a wide use in the pharmaceutical and manufacturing industries. Wet lab experiments to figure out an enzyme's function are time ...

A pre-training and self-training approach for biomedical named entity recognition.

PloS one
Named entity recognition (NER) is a key component of many scientific literature mining tasks, such as information retrieval, information extraction, and question answering; however, many modern approaches require large amounts of labeled training dat...

A Preliminary Characterization of Canonicalized and Non-Canonicalized Section Headers Across Variable Clinical Note Types.

AMIA ... Annual Symposium proceedings. AMIA Symposium
In the electronic health record, the majority of clinically relevant information is stored within clinical notes. Most clinical notes follow a set organizational structure composed of canonicalized section headers that facilitate clinical review and ...

A semantic database for integrated management of image and dosimetric data in low radiation dose research in medical imaging.

AMIA ... Annual Symposium proceedings. AMIA Symposium
Medical ionizing radiation procedures and especially medical imaging are a non negligible source of exposure to patients. Whereas the biological effects of high absorbed doses are relatively well known, the effects of low absorbed doses are still deb...

Learning and interpreting the gene regulatory grammar in a deep learning framework.

PLoS computational biology
Deep neural networks (DNNs) have achieved state-of-the-art performance in identifying gene regulatory sequences, but they have provided limited insight into the biology of regulatory elements due to the difficulty of interpreting the complex features...

LncLocation: Efficient Subcellular Location Prediction of Long Non-Coding RNA-Based Multi-Source Heterogeneous Feature Fusion.

International journal of molecular sciences
Recent studies uncover that subcellular location of long non-coding RNAs (lncRNAs) can provide significant information on its function. Due to the lack of experimental data, the number of lncRNAs is very limited, experimentally verified subcellular l...

One Algorithm May Not Fit All: How Selection Bias Affects Machine Learning Performance.

Radiographics : a review publication of the Radiological Society of North America, Inc
Machine learning (ML) algorithms have demonstrated high diagnostic accuracy in identifying and categorizing disease on radiologic images. Despite the results of initial research studies that report ML algorithm diagnostic accuracy similar to or excee...

Ontology and values anchor indigenous and grey nomenclatures: a case study in lichen naming practices among the Samí, Sherpa, Scots, and Okanagan.

Studies in history and philosophy of biological and biomedical sciences
Ethnobotanical research provides ample justification for comparing diverse biological nomenclatures and exploring ways that retain alternative naming practices. However, how (and whether) comparison of nomenclatures is possible remains a subject of d...