AIMC Topic: Animals

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QAcon: single model quality assessment using protein structural and contact information with machine learning techniques.

Bioinformatics (Oxford, England)
MOTIVATION: Protein model quality assessment (QA) plays a very important role in protein structure prediction. It can be divided into two groups of methods: single model and consensus QA method. The consensus QA methods may fail when there is a large...

Optimizing ChIP-seq peak detectors using visual labels and supervised machine learning.

Bioinformatics (Oxford, England)
MOTIVATION: Many peak detection algorithms have been proposed for ChIP-seq data analysis, but it is not obvious which algorithm and what parameters are optimal for any given dataset. In contrast, regions with and without obvious peaks can be easily l...

miRNAmeConverter: an R/bioconductor package for translating mature miRNA names to different miRBase versions.

Bioinformatics (Oxford, England)
SUMMARY: The miRBase database is the central and official repository for miRNAs and the current release is miRBase version 21.0. Name changes in different miRBase releases cause inconsistencies in miRNA names from version to version. When working wit...

Silica Cross-Linked Micellar Core--Shell Nanoparticles Encapsulating IR-780 with Strong Bright and Good Biocompatibility for Optical Imaging In Vivo.

Journal of biomedical nanotechnology
IR-780 iodide, a near-infrared (NIR) fluorescent heptamethine dye, has attracted wide attention in the biomedical community. However, hydrophobicity and toxicity severely limit its further biomedical application. Although many successful efforts have...

Use of Robotic Manipulators to Study Diarthrodial Joint Function.

Journal of biomechanical engineering
Diarthrodial joint function is mediated by a complex interaction between bones, ligaments, capsules, articular cartilage, and muscles. To gain a better understanding of injury mechanisms and to improve surgical procedures, an improved understanding o...

Computational Architecture of the Granular Layer of Cerebellum-Like Structures.

Cerebellum (London, England)
In the adaptive filter model of the cerebellum, the granular layer performs a recoding which expands incoming mossy fibre signals into a temporally diverse set of basis signals. The underlying neural mechanism is not well understood, although various...

Soft robotic sleeve supports heart function.

Science translational medicine
There is much interest in form-fitting, low-modulus, implantable devices or soft robots that can mimic or assist in complex biological functions such as the contraction of heart muscle. We present a soft robotic sleeve that is implanted around the he...

Complementary learning systems within the hippocampus: a neural network modelling approach to reconciling episodic memory with statistical learning.

Philosophical transactions of the Royal Society of London. Series B, Biological sciences
A growing literature suggests that the hippocampus is critical for the rapid extraction of regularities from the environment. Although this fits with the known role of the hippocampus in rapid learning, it seems at odds with the idea that the hippoca...

Effect of Dilution on Cryosurvival of Low Sperm Doses: A Review.

Cryo letters
  BACKGROUND: Sperm concentration needed for artificial insemination (AI) to obtain reasonable fertility, taking into consideration genetic value of bull and numerous others components is one of the essential constituents for successful breeding prog...

Canonical correlation analysis to identify the semen characteristics used to forecast the freeze survival of Curimba (Prochilodus lineatus) spermatozoa.

Cryo letters
UNLABELLED:   OBJECTIVE: To identify which sperm characteristics were able to predict more accurately the quality of curimba (Prochilodus lineatus) semen upon freezing using canonical correlation analysis.