AIMC Topic: Deep Learning

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DeepPET: A deep encoder-decoder network for directly solving the PET image reconstruction inverse problem.

Medical image analysis
The purpose of this research was to implement a deep learning network to overcome two of the major bottlenecks in improved image reconstruction for clinical positron emission tomography (PET). These are the lack of an automated means for the optimiza...

Neural networks for automatic scoring of arthritis disease activity on ultrasound images.

RMD open
BACKGROUND: The development of standardised methods for ultrasound (US) scanning and evaluation of synovitis activity by the OMERACT-EULAR Synovitis Scoring (OESS) system is a major step forward in the use of US in the diagnosis and monitoring of pat...

DeepQSM - using deep learning to solve the dipole inversion for quantitative susceptibility mapping.

NeuroImage
Quantitative susceptibility mapping (QSM) is based on magnetic resonance imaging (MRI) phase measurements and has gained broad interest because it yields relevant information on biological tissue properties, predominantly myelin, iron and calcium in ...

Bagging and deep learning in optimal individualized treatment rules.

Biometrics
An ENsemble Deep Learning Optimal Treatment (EndLot) approach is proposed for personalized medicine problems. The statistical framework of the proposed method is based on the outcome weighted learning (OWL) framework which transforms the optimal deci...

Binary tree-like network with two-path Fusion Attention Feature for cervical cell nucleus segmentation.

Computers in biology and medicine
Early detection of cervical lesion is of great significance in reducing mortality from cervical cancer, and segmentation of cervical cell nuclei plays an important role in screening for cervical lesion. Compared with traditional algorithms, several d...

Deep neural-kernel blocks.

Neural networks : the official journal of the International Neural Network Society
This paper introduces novel deep architectures using the hybrid neural-kernel core model as the first building block. The proposed models follow a combination of a neural networks based architecture and a kernel based model enriched with pooling laye...

Pulmonary nodule detection in CT scans with equivariant CNNs.

Medical image analysis
Convolutional Neural Networks (CNNs) require a large amount of annotated data to learn from, which is often difficult to obtain for medical imaging problems. In this work we show that the sample complexity of CNNs can be significantly improved by usi...

Selene: a PyTorch-based deep learning library for sequence data.

Nature methods
To enable the application of deep learning in biology, we present Selene (https://selene.flatironinstitute.org/), a PyTorch-based deep learning library for fast and easy development, training, and application of deep learning model architectures for ...