AIMC Topic: DNA Methylation

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Identification and validation of biomarkers associated with cellular senescence and demethylation in acute myocardial infarction.

Scientific reports
Acute myocardial infarction (AMI) triggered cardiomyocyte senescence and impaired cardiac function. Methylation modifications and related enzymes in patients were also significantly altered, but the association between cellular senescence and demethy...

Regulators of homologous recombination deficiency identified by machine learning using somatic multi-omics data.

Life science alliance
Homologous recombination deficiency (HRD) is a critical biomarker for guiding targeted therapies, yet the full range of somatic alterations driving HRD across cancers remains incompletely characterized. Here, we present a tumor-agnostic machine learn...

Global DNA methylation signatures associated with chemoresistance and poor prognosis of high grade serous ovarian cancer.

Scientific reports
Ovarian cancer (OVCA) is third most lethal gynecologic cancers and acquired chemoresistance is the key link in the high mortality rate of OVCA patients. Currently, there are no reliable methods to predict chemoresistance in OVCA. In our study, we ide...

A DNA methylation-based algorithm for diagnosing rheumatoid arthritis.

Arthritis research & therapy
BACKGROUND: Rheumatoid arthritis (RA), particularly seronegative disease, is difficult to diagnose early, which can delay treatment initiation. This study aims to develop a binary DNA methylation (DNAm)-based algorithm to diagnose RA.

DNA methylation and machine learning: challenges and perspective toward enhanced clinical diagnostics.

Clinical epigenetics
DNA methylation is an epigenetic modification that regulates gene expression by adding methyl groups to DNA, affecting cellular function and disease development. Machine learning, a subset of artificial intelligence, analyzes large datasets to identi...

Foundation model based multimodal transformer framework for survival analysis in HER2 stratified breast cancer.

Physics in medicine and biology
. To improve survival prediction for HER2-positive breast cancer by integrating histopathological, molecular, and clinical data using a multimodal transformer framework.. We propose a multimodal transformer framework for breast cancer survival predic...

A ternary-code DNA methylome atlas of mouse tissues.

Genome biology
BACKGROUND: DNA cytosine modifications, including 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC), are key epigenetic regulators with distinct functions. Dissecting the ternary code (C, 5mC, 5hmC) across tissues and cell types remains a cri...

Identification of methylation-related genes and the potential regulatory mechanism of SLAMF6 in CMS4 colorectal cancer.

Clinical epigenetics
BACKGROUNDS: Consensus molecular subtype 4 (CMS4) of colorectal cancer (CRC) is characterized by TGF-β activation, and generally accompanied with metastasis and recurrence. Nevertheless, molecular biomarkers and regulatory mechanisms underlying CMS4 ...