AIMC Topic: Machine Learning

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An enhanced machine learning tool for cis-eQTL mapping with regularization and confounder adjustments.

Genetic epidemiology
Many expression quantitative trait loci (eQTL) studies have been conducted to investigate the biological effects of variants in gene regulation. However, these eQTL studies may suffer from low or moderate statistical power and overly conservative fal...

Using intravascular ultrasound image-based fluid-structure interaction models and machine learning methods to predict human coronary plaque vulnerability change.

Computer methods in biomechanics and biomedical engineering
Plaque vulnerability prediction is of great importance in cardiovascular research. In vivo follow-up intravascular ultrasound (IVUS) coronary plaque data were acquired from nine patients to construct fluid-structure interaction models to obtain plaqu...

Drawing insights from COVID-19-infected patients using CT scan images and machine learning techniques: a study on 200 patients.

Environmental science and pollution research international
As the whole world is witnessing what novel coronavirus (COVID-19) can do to the mankind, it presents several unique features also. In the absence of specific vaccine for COVID-19, it is essential to detect the disease at an early stage and isolate a...

Improving Enzyme Optimum Temperature Prediction with Resampling Strategies and Ensemble Learning.

Journal of chemical information and modeling
Accurate prediction of the optimal catalytic temperature () of enzymes is vital in biotechnology, as enzymes with high values are desired for enhanced reaction rates. Recently, a machine learning method (temperature optima for microorganisms and enz...

Causality matters in medical imaging.

Nature communications
Causal reasoning can shed new light on the major challenges in machine learning for medical imaging: scarcity of high-quality annotated data and mismatch between the development dataset and the target environment. A causal perspective on these issues...

Diffusion Histology Imaging Combining Diffusion Basis Spectrum Imaging (DBSI) and Machine Learning Improves Detection and Classification of Glioblastoma Pathology.

Clinical cancer research : an official journal of the American Association for Cancer Research
PURPOSE: Glioblastoma (GBM) is one of the deadliest cancers with no cure. While conventional MRI has been widely adopted to examine GBM clinically, accurate neuroimaging assessment of tumor histopathology for improved diagnosis, surgical planning, an...

Radiogenomics for predicting p53 status, PD-L1 expression, and prognosis with machine learning in pancreatic cancer.

British journal of cancer
BACKGROUND: Radiogenomics is an emerging field that integrates "Radiomics" and "Genomics". In the current study, we aimed to predict the genetic information of pancreatic tumours in a simple, inexpensive, and non-invasive manner, using cancer imaging...

Automatic skin lesion classification based on mid-level feature learning.

Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society
Dermoscopic images are widely used for melanoma detection. Many existing works based on traditional classification methods and deep learning models have been proposed for automatic skin lesion analysis. The traditional classification methods use hand...