AIMC Topic: Models, Biological

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Deep Learning for Musculoskeletal Force Prediction.

Annals of biomedical engineering
Musculoskeletal models permit the determination of internal forces acting during dynamic movement, which is clinically useful, but traditional methods may suffer from slowness and a need for extensive input data. Recently, there has been interest in ...

Deep learning for DNase I hypersensitive sites identification.

BMC genomics
BACKGROUND: The DNase I hypersensitive sites (DHSs) are associated with the cis-regulatory DNA elements. An efficient method of identifying DHSs can enhance the understanding on the accessibility of chromatin. Despite a multitude of resources availab...

Model based on GA and DNN for prediction of mRNA-Smad7 expression regulated by miRNAs in breast cancer.

Theoretical biology & medical modelling
BACKGROUND: The Smad7 protein is negative regulator of the TGF-β signaling pathway, which is upregulated in patients with breast cancer. miRNAs regulate proteins expressions by arresting or degrading the mRNAs. The purpose of this work is to identify...

Prediction of Membrane Permeation of Drug Molecules by Combining an Implicit Membrane Model with Machine Learning.

Journal of chemical information and modeling
Lipid membrane permeation of drug molecules was investigated with Heterogeneous Dielectric Generalized Born (HDGB)-based models using solubility-diffusion theory and machine learning. Free energy profiles were obtained for neutral molecules by the st...

Private naive bayes classification of personal biomedical data: Application in cancer data analysis.

Computers in biology and medicine
Clinicians would benefit from access to predictive models for diagnosis, such as classification of tumors as malignant or benign, without compromising patients' privacy. In addition, the medical institutions and companies who own these medical inform...

Multi-Institutional Validation of a Knowledge-Based Planning Model for Patients Enrolled in RTOG 0617: Implications for Plan Quality Controls in Cooperative Group Trials.

Practical radiation oncology
PURPOSE: This study aimed to evaluate the feasibility of using a single-institution, knowledge-based planning (KBP) model as a dosimetric plan quality control (QC) for multi-institutional clinical trials. The efficacy of this QC tool was retrospectiv...

From deep learning to transfer learning for the prediction of skeletal muscle forces.

Medical & biological engineering & computing
Skeletal muscle forces may be estimated using rigid musculoskeletal models and neural networks. Neural network (NN) approach has the advantages of real-time estimation ability and promising prediction accuracy. However, most of the developed NN model...

Machine learning applied to enzyme turnover numbers reveals protein structural correlates and improves metabolic models.

Nature communications
Knowing the catalytic turnover numbers of enzymes is essential for understanding the growth rate, proteome composition, and physiology of organisms, but experimental data on enzyme turnover numbers is sparse and noisy. Here, we demonstrate that machi...

Maneuvering and stabilization control of a bipedal robot with a universal-spatial robotic tail.

Bioinspiration & biomimetics
This paper analyzes control methodologies to implement maneuvering and stabilization behaviors in a bipedal robot using a bioinspired robotic tail. Looking to nature, numerous animals augment their legs' functionality using a tail nature, numerous an...

Development and flight performance of a biologically-inspired tailless flapping-wing micro air vehicle with wing stroke plane modulation.

Bioinspiration & biomimetics
The tailless flapping-wing micro air vehicle (FW-MAV) is one of the most challenging problems in flapping-wing design due to its lack of tail for inherent flight stability. It must be designed in such a way that it can produce proper augmented contro...