AIMC Topic:
Software
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RDE: A novel approach to improve the classification performance and expressivity of KDB.
PloS one
Jul 23, 2018
Bayesian network classifiers (BNCs) have demonstrated competitive classification performance in a variety of real-world applications. A highly scalable BNC with high expressivity is extremely desirable. This paper proposes Redundant Dependence Elimin...
Fully automatic cross-modality localization and labeling of vertebral bodies and intervertebral discs in 3D spinal images.
International journal of computer assisted radiology and surgery
Jul 19, 2018
PURPOSE: We present a cross-modality and fully automatic pipeline for labeling of intervertebral discs and vertebrae in volumetric data of the lumbar and thoracolumbar spine. The main goal is to provide an algorithm that is applicable to a wide range...
PV Analyzer: A Decision Support System for Photovoltaic Solar Cells Libraries.
Molecular informatics
Jul 18, 2018
This work describes the integration of several data mining and machine learning tools for researching Photovoltaic (PV) solar cells libraries into a unified workflow embedded within a GUI-supported Decision Support System (DSS), named PV Analyzer. Th...
GOATOOLS: A Python library for Gene Ontology analyses.
Scientific reports
Jul 18, 2018
The biological interpretation of gene lists with interesting shared properties, such as up- or down-regulation in a particular experiment, is typically accomplished using gene ontology enrichment analysis tools. Given a list of genes, a gene ontology...
CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata.
BMC bioinformatics
Jul 16, 2018
BACKGROUND: Public biomedical data repositories often provide web-based interfaces to collect experimental metadata. However, these interfaces typically reflect the ad hoc metadata specification practices of the associated repositories, leading to a ...
A computer-based approach for data analyzing in hospital's health-care waste management sector by developing an index using consensus-based fuzzy multi-criteria group decision-making models.
International journal of medical informatics
Jul 11, 2018
BACKGROUND: Proper Health-Care Waste Management (HCWM) and integrated documentation in this sector of hospitals require analyzing massive data collected by hospital's health experts. This study presented a quantitative software-based index to assess ...
Drug response prediction by ensemble learning and drug-induced gene expression signatures.
Genomics
Jul 6, 2018
Chemotherapeutic response of cancer cells to a given compound is one of the most fundamental information one requires to design anti-cancer drugs. Recently, considerable amount of drug-induced gene expression data has become publicly available, in ad...
An open-source tool for analysis and automatic identification of dendritic spines using machine learning.
PloS one
Jul 5, 2018
Synaptic plasticity, the cellular basis for learning and memory, is mediated by a complex biochemical network of signaling proteins. These proteins are compartmentalized in dendritic spines, the tiny, bulbous, post-synaptic structures found on neuron...
Environmental properties of cells improve machine learning-based phenotype recognition accuracy.
Scientific reports
Jul 4, 2018
To answer major questions of cell biology, it is often essential to understand the complex phenotypic composition of cellular systems precisely. Modern automated microscopes produce vast amounts of images routinely, making manual analysis nearly impo...
PLANET-SNP pipeline: PLants based ANnotation and Establishment of True SNP pipeline.
Genomics
Jul 3, 2018
Acute prediction of SNPs (Single Nucleotide Polymorphisms) from high throughput sequencing data is a challenging problem, having potential to explore possible variation within plants species. For the extraction of profitable information from bulk of ...
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