AIMC Topic: Software

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HyDRA: gene prioritization via hybrid distance-score rank aggregation.

Bioinformatics (Oxford, England)
UNLABELLED: Gene prioritization refers to a family of computational techniques for inferring disease genes through a set of training genes and carefully chosen similarity criteria. Test genes are scored based on their average similarity to the traini...

Towards cybernetic surgery: robotic and augmented reality-assisted liver segmentectomy.

Langenbeck's archives of surgery
BACKGROUND: Augmented reality (AR) in surgery consists in the fusion of synthetic computer-generated images (3D virtual model) obtained from medical imaging preoperative workup and real-time patient images in order to visualize unapparent anatomical ...

A novel EOG/EEG hybrid human-machine interface adopting eye movements and ERPs: application to robot control.

IEEE transactions on bio-medical engineering
This study presents a novel human-machine interface (HMI) based on both electrooculography (EOG) and electroencephalography (EEG). This hybrid interface works in two modes: an EOG mode recognizes eye movements such as blinks, and an EEG mode detects ...

The GOA database: gene Ontology annotation updates for 2015.

Nucleic acids research
The Gene Ontology Annotation (GOA) resource (http://www.ebi.ac.uk/GOA) provides evidence-based Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB). Manual annotations provided by UniProt curators are supplemented by ma...

Automated tracking and analysis of behavior in restrained insects.

Journal of neuroscience methods
BACKGROUND: Insect behavior is often monitored by human observers and measured in the form of binary responses. This procedure is time costly and does not allow a fine graded measurement of behavioral performance in individual animals. To overcome th...

An Integrated Framework for Human-Robot Collaborative Manipulation.

IEEE transactions on cybernetics
This paper presents an integrated learning framework that enables humanoid robots to perform human-robot collaborative manipulation tasks. Specifically, a table-lifting task performed jointly by a human and a humanoid robot is chosen for validation p...

BiobankConnect: software to rapidly connect data elements for pooled analysis across biobanks using ontological and lexical indexing.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: Pooling data across biobanks is necessary to increase statistical power, reveal more subtle associations, and synergize the value of data sources. However, searching for desired data elements among the thousands of available elements and h...

Diagnostic performance of bone scintigraphy analyzed by three artificial neural network systems.

Annals of nuclear medicine
OBJECTIVE: The accuracy of bone scintigraphy analyzed by computer-assisted diagnosis (CAD) software involving multiple artificial neural network (ANN) systems has not been well established.

DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis.

Bioinformatics (Oxford, England)
SUMMARY: Disease ontology (DO) annotates human genes in the context of disease. DO is important annotation in translating molecular findings from high-throughput data to clinical relevance. DOSE is an R package providing semantic similarity computati...

Towards semantic-driven high-content image analysis: an operational instantiation for mitosis detection in digital histopathology.

Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society
This study concerns a novel symbolic cognitive vision framework emerged from the Cognitive Microscopy (MICO(1)) initiative. MICO aims at supporting the evolution towards digital pathology, by studying cognitive clinical-compliant protocols involving ...