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Staphylococcus aureus

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Integrated epigenomic exposure signature discovery.

Epigenomics
The epigenome influences gene regulation and phenotypes in response to exposures. Epigenome assessment can determine exposure history aiding in diagnosis. Here we developed and implemented a machine learning algorithm, the exposure signature discove...

Capabilities of GPT-4o and Gemini 1.5 Pro in Gram stain and bacterial shape identification.

Future microbiology
Assessing the visual accuracy of two large language models (LLMs) in microbial classification. GPT-4o and Gemini 1.5 Pro were evaluated in distinguishing Gram-positive from Gram-negative bacteria and classifying them as cocci or bacilli using 80 Gra...

Machine Learning-Driven Discovery and Evaluation of Antimicrobial Peptides from Mucus Proteome.

Marine drugs
Marine antimicrobial peptides (AMPs) represent a promising source for combating infections, especially against antibiotic-resistant pathogens and traditionally challenging infections. However, traditional drug discovery methods face challenges such a...

Discovery of AMPs from random peptides via deep learning-based model and biological activity validation.

European journal of medicinal chemistry
The ample peptide field is the best source for discovering clinically available novel antimicrobial peptides (AMPs) to address emerging drug resistance. However, discovering novel AMPs is complex and expensive, representing a major challenge. Recent ...

VacSol-ML(ESKAPE) Machine learning empowering vaccine antigen prediction for ESKAPE pathogens.

Vaccine
The ESKAPE family, comprising Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa, and Enterobacter spp., poses a significant global threat due to their heightened virulence and extensiv...

Identification of Staphylococcus aureus, Enterococcus faecium, Klebsiella pneumoniae, Pseudomonas aeruginosa and Acinetobacter baumannii from Raman spectra by Artificial Intelligent Raman Detection and Identification System (AIRDIS) with machine learning.

Journal of microbiology, immunology, and infection = Wei mian yu gan ran za zhi
BACKGROUND: Rapid and accurate identification of bacteria is required in order to develop effective treatment strategies. Traditional culture-based methods are time-consuming, while MALDI-TOF MS is expensive. The Raman spectroscopy, due to its relati...

Antimicrobial efficacy of an experimental UV-C robot in controlled conditions and in a real hospital scenario.

The Journal of hospital infection
BACKGROUND: Among no-touch automated disinfection devices, ultraviolet-C (UV-C) radiation has been proven to be one of the most effective against a broad spectrum of micro-organisms causing healthcare-associated infections.

Application of artificial neural network for the mechano-bactericidal effect of bioinspired nanopatterned surfaces.

European biophysics journal : EBJ
This study aimed to calculate the effect of nanopatterns' peak sharpness, width, and spacing parameters on P. aeruginosa and S. aureus cell walls by artificial neural network and finite element analysis. Elastic and creep deformation models of bacter...

High-content imaging and deep learning-driven detection of infectious bacteria in wounds.

Bioprocess and biosystems engineering
Fast and accurate detection of infectious bacteria in wounds is crucial for effective clinical treatment. However, traditional methods take over 24 h to yield results, which is inadequate for urgent clinical needs. Here, we introduce a deep learning-...