AIMC Topic: Cluster Analysis

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From lexical regularities to axiomatic patterns for the quality assurance of biomedical terminologies and ontologies.

Journal of biomedical informatics
Ontologies and terminologies have been identified as key resources for the achievement of semantic interoperability in biomedical domains. The development of ontologies is performed as a joint work by domain experts and knowledge engineers. The maint...

Managing the 1920s' Chilean educational crisis: A historical view combined with machine learning.

PloS one
In the first decades of the 20th century, political actors diagnosed the incubation of a crisis in the Chilean schooling process. Low rates of enrollment, literacy, and attendance, inefficiency in the use of resources, poverty, and a reduced number o...

Affinity network fusion and semi-supervised learning for cancer patient clustering.

Methods (San Diego, Calif.)
Defining subtypes of complex diseases such as cancer and stratifying patient groups with the same disease but different subtypes for targeted treatments is important for personalized and precision medicine. Approaches that incorporate multi-omic data...

Incremental fuzzy C medoids clustering of time series data using dynamic time warping distance.

PloS one
Clustering time series data is of great significance since it could extract meaningful statistics and other characteristics. Especially in biomedical engineering, outstanding clustering algorithms for time series may help improve the health level of ...

Simulation of patient flow in multiple healthcare units using process and data mining techniques for model identification.

Journal of biomedical informatics
INTRODUCTION: An approach to building a hybrid simulation of patient flow is introduced with a combination of data-driven methods for automation of model identification. The approach is described with a conceptual framework and basic methods for comb...

Predictive Model of Linear Antimicrobial Peptides Active against Gram-Negative Bacteria.

Journal of chemical information and modeling
Antimicrobial peptides (AMPs) have been identified as a potential new class of anti-infectives for drug development. There are a lot of computational methods that try to predict AMPs. Most of them can only predict if a peptide will show any antimicro...

Quantifying cell densities and biovolumes of phytoplankton communities and functional groups using scanning flow cytometry, machine learning and unsupervised clustering.

PloS one
Scanning flow cytometry (SFCM) is characterized by the measurement of time-resolved pulses of fluorescence and scattering, enabling the high-throughput quantification of phytoplankton morphology and pigmentation. Quantifying variation at the single c...

An unsupervised automatic segmentation algorithm for breast tissue classification of dedicated breast computed tomography images.

Medical physics
PURPOSE: To develop and evaluate a new automatic classification algorithm to identify voxels containing skin, vasculature, adipose, and fibroglandular tissue in dedicated breast CT images.

RaptorX-Angle: real-value prediction of protein backbone dihedral angles through a hybrid method of clustering and deep learning.

BMC bioinformatics
BACKGROUND: Protein dihedral angles provide a detailed description of protein local conformation. Predicted dihedral angles can be used to narrow down the conformational space of the whole polypeptide chain significantly, thus aiding protein tertiary...

Denoising Autoencoder Self-Organizing Map (DASOM).

Neural networks : the official journal of the International Neural Network Society
In this report, we address the question of combining nonlinearities of neurons into networks for modeling increasingly varying and progressively more complex functions. A fundamental approach is the use of higher-level representations devised by rest...