AIMC Topic: Datasets as Topic

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An integrative machine learning strategy for improved prediction of essential genes in Escherichia coli metabolism using flux-coupled features.

Molecular bioSystems
Prediction of essential genes helps to identify a minimal set of genes that are absolutely required for the appropriate functioning and survival of a cell. The available machine learning techniques for essential gene prediction have inherent problems...

Automated classification of eligibility criteria in clinical trials to facilitate patient-trial matching for specific patient populations.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: To develop automated classification methods for eligibility criteria in ClinicalTrials.gov to facilitate patient-trial matching for specific populations such as persons living with HIV or pregnant women.

De-identification of patient notes with recurrent neural networks.

Journal of the American Medical Informatics Association : JAMIA
OBJECTIVE: Patient notes in electronic health records (EHRs) may contain critical information for medical investigations. However, the vast majority of medical investigators can only access de-identified notes, in order to protect the confidentiality...

Protein subcellular localization prediction using multiple kernel learning based support vector machine.

Molecular bioSystems
Predicting the subcellular locations of proteins can provide useful hints that reveal their functions, increase our understanding of the mechanisms of some diseases, and finally aid in the development of novel drugs. As the number of newly discovered...

Improving CCTA-based lesions' hemodynamic significance assessment by accounting for partial volume modeling in automatic coronary lumen segmentation.

Medical physics
PURPOSE: The goal of this study was to assess the potential added benefit of accounting for partial volume effects (PVE) in an automatic coronary lumen segmentation algorithm that is used to determine the hemodynamic significance of a coronary artery...

MRI-based prostate cancer detection with high-level representation and hierarchical classification.

Medical physics
PURPOSE: Extracting the high-level feature representation by using deep neural networks for detection of prostate cancer, and then based on high-level feature representation constructing hierarchical classification to refine the detection results.

Discriminating solitary cysts from soft tissue lesions in mammography using a pretrained deep convolutional neural network.

Medical physics
PURPOSE: It is estimated that 7% of women in the western world will develop palpable breast cysts in their lifetime. Even though cysts have been correlated with risk of developing breast cancer, many of them are benign and do not require follow-up. W...

Using deep learning to segment breast and fibroglandular tissue in MRI volumes.

Medical physics
PURPOSE: Automated segmentation of breast and fibroglandular tissue (FGT) is required for various computer-aided applications of breast MRI. Traditional image analysis and computer vision techniques, such atlas, template matching, or, edge and surfac...

Collection of Simulated Data from a Thalamocortical Network Model.

Neuroinformatics
A major challenge in experimental data analysis is the validation of analytical methods in a fully controlled scenario where the justification of the interpretation can be made directly and not just by plausibility. In some sciences, this could be a ...