AIMC Topic: Deep Learning

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Evaluation of classification and forecasting methods on time series gene expression data.

PloS one
Time series gene expression data is widely used to study different dynamic biological processes. Although gene expression datasets share many of the characteristics of time series data from other domains, most of the analyses in this field do not ful...

Artificial intelligence identifies inflammation and confirms fibroblast foci as prognostic tissue biomarkers in idiopathic pulmonary fibrosis.

Human pathology
A large number of fibroblast foci (FF) predict mortality in idiopathic pulmonary fibrosis (IPF). Other prognostic histological markers have not been identified. Artificial intelligence (AI) offers a possibility to quantitate possible prognostic histo...

Deep Learning-Based Segmentation and Quantification in Experimental Kidney Histopathology.

Journal of the American Society of Nephrology : JASN
BACKGROUND: Nephropathologic analyses provide important outcomes-related data in experiments with the animal models that are essential for understanding kidney disease pathophysiology. Precision medicine increases the demand for quantitative, unbiase...

A generative flow-based model for volumetric data augmentation in 3D deep learning for computed tomographic colonography.

International journal of computer assisted radiology and surgery
PURPOSE: Deep learning can be used for improving the performance of computer-aided detection (CADe) in various medical imaging tasks. However, in computed tomographic (CT) colonography, the performance is limited by the relatively small size and the ...

Deep Learning on chromatographic data for Segmentation and Sensitive Analysis.

Journal of chromatography. A
Lateral flow immunoassay (LFIA) is one of the most common methods in point-of-care testing, which is widely applied in some conditions for various applications. Image segmentation is an increasingly popular experimental paradigm to efficiently test t...

Development and Validation of a Deep Learning-Based Automatic Brain Segmentation and Classification Algorithm for Alzheimer Disease Using 3D T1-Weighted Volumetric Images.

AJNR. American journal of neuroradiology
BACKGROUND AND PURPOSE: Limited evidence has suggested that a deep learning automatic brain segmentation and classification method, based on T1-weighted brain MR images, can predict Alzheimer disease. Our aim was to develop and validate a deep learni...

Deep learning-based model for detecting 2019 novel coronavirus pneumonia on high-resolution computed tomography.

Scientific reports
Computed tomography (CT) is the preferred imaging method for diagnosing 2019 novel coronavirus (COVID19) pneumonia. We aimed to construct a system based on deep learning for detecting COVID-19 pneumonia on high resolution CT. For model development an...

Deep learning approach for predicting functional Z-DNA regions using omics data.

Scientific reports
Computational methods to predict Z-DNA regions are in high demand to understand the functional role of Z-DNA. The previous state-of-the-art method Z-Hunt is based on statistical mechanical and energy considerations about B- to Z-DNA transition using ...

Cumulative learning enables convolutional neural network representations for small mass spectrometry data classification.

Nature communications
Rapid and accurate clinical diagnosis remains challenging. A component of diagnosis tool development is the design of effective classification models with Mass spectrometry (MS) data. Some Machine Learning approaches have been investigated but these ...