AIMC Topic: Models, Biological

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ADPO: automatic-differentiation-assisted parametric optimization.

Journal of pharmacokinetics and pharmacodynamics
Automatic differentiation (AD), a key method for accurately and efficiently computing derivatives in modern machine learning, is now implemented in Phoenix® NLME™ 8.6 for the first time and applied to the first-order conditional estimation extended l...

Gaussian process modelling of infectious diseases using the Greta software package and GPUs.

Journal of theoretical biology
Gaussian process are a widely-used statistical tool for conducting non-parametric inference in applied sciences, with many computational packages available to fit to data and predict future observations. We study the use of the Greta software for Bay...

3D Bioprinting and Artificial Intelligence for Tumor Microenvironment Modeling: A Scoping Review of Models, Methods, and Integration Pathways.

Molecular pharmaceutics
Recent advances in cancer research emphasize the development of physiologically relevant models to better understand tumor behavior and therapeutic responses. The tumor microenvironment (TME) plays a pivotal role in tumor progression, metastasis, and...

Organoids as predictive platforms: advancing disease modeling, therapeutic innovation, and drug delivery systems.

Journal of controlled release : official journal of the Controlled Release Society
As three-dimensional (3D), physiologically relevant models, organoids are rapidly becoming revolutionary platforms in biomedical research. With their ability to recapitulate tissue architecture, disease heterogeneity, and patient-specific therapeutic...

Optimal position fuzzy control for coordinated movement of the ring and little fingers in an impaired human hand.

Biological cybernetics
The dexterity of the human hand is largely due to its multiple degrees of freedom. However, coordinating the movements of the ring and little fingers independently can be challenging because of the biomechanical and neurological interdependencies bet...

Computational approaches for toxicology and Pharmacokinetic properties prediction.

Journal of pharmacokinetics and pharmacodynamics
Pharmacokinetics and toxicological studies how the body reacts to a specific administered substance, such as a drug, toxin, or food. Each substance experiences these four steps: absorption, distribution, metabolism, and excretion, which are the main ...

Current state and open problems in universal differential equations for systems biology.

NPJ systems biology and applications
Universal Differential Equations (UDEs) combine mechanistic differential equations with data-driven artificial neural networks, forming a flexible framework for modelling complex biological systems. This hybrid approach leverages prior knowledge and ...

Trait mediation explains decadal distributional shifts for a wide range of insect taxa.

Nature communications
Shifts in insect distributions have been reported globally, largely attributed to climate and landscape changes. Communities are being reshaped, with species response traits mediating the effects of changing environments. Using a machine-learning app...

Leveraging agent-based models and deep reinforcement learning to predict taxis in cell migration.

NPJ systems biology and applications
We present a novel computational framework that combines Agent-Based Modeling (ABM) with Reinforcement Learning (RL) using the Double Deep Q-Network (DDQN) algorithm to determine cellular behavior in response to environmental signals. With this appro...

Systematic selection of best performing mathematical models for in vitro gas production using machine learning across diverse feeds.

Scientific reports
In vitro gas production (GP) is commonly used to evaluate ruminant feed, yet its accurate interpretation requires robust mathematical modeling. This study systematically explores a wide array of nonlinear models to explain GP dynamics across various ...