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Cell Nucleus

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Efficient deep learning architecture with dimension-wise pyramid pooling for nuclei segmentation of histopathology images.

Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society
Image segmentation remains to be one of the most vital tasks in the area of computer vision and more so in the case of medical image processing. Image segmentation quality is the main metric that is often considered with memory and computation effici...

Deep learning to design nuclear-targeting abiotic miniproteins.

Nature chemistry
There are more amino acid permutations within a 40-residue sequence than atoms on Earth. This vast chemical search space hinders the use of human learning to design functional polymers. Here we show how machine learning enables the de novo design of ...

Quick Annotator: an open-source digital pathology based rapid image annotation tool.

The journal of pathology. Clinical research
Image-based biomarker discovery typically requires accurate segmentation of histologic structures (e.g. cell nuclei, tubules, and epithelial regions) in digital pathology whole slide images (WSIs). Unfortunately, annotating each structure of interest...

Evaluating Very Deep Convolutional Neural Networks for Nucleus Segmentation from Brightfield Cell Microscopy Images.

SLAS discovery : advancing life sciences R & D
Advances in microscopy have increased output data volumes, and powerful image analysis methods are required to match. In particular, finding and characterizing nuclei from microscopy images, a core cytometry task, remains difficult to automate. While...

SRPN: similarity-based region proposal networks for nuclei and cells detection in histology images.

Medical image analysis
The detection of nuclei and cells in histology images is of great value in both clinical practice and pathological studies. However, multiple reasons such as morphological variations of nuclei or cells make it a challenging task where conventional ob...

Active Subdivision Surfaces for the Semiautomatic Segmentation of Biomedical Volumes.

IEEE transactions on image processing : a publication of the IEEE Signal Processing Society
We present a new family of active surfaces for the semiautomatic segmentation of volumetric objects in 3D biomedical images. We represent our deformable model by a subdivision surface encoded by a small set of control points and generated through a g...

Practical segmentation of nuclei in brightfield cell images with neural networks trained on fluorescently labelled samples.

Journal of microscopy
Identifying nuclei is a standard first step when analysing cells in microscopy images. The traditional approach relies on signal from a DNA stain, or fluorescent transgene expression localised to the nucleus. However, imaging techniques that do not u...

MDC-net: A new convolutional neural network for nucleus segmentation in histopathology images with distance maps and contour information.

Computers in biology and medicine
Accurate segmentation of nuclei in digital pathology images can assist doctors in diagnosing diseases and evaluating subsequent treatments. Manual segmentation of nuclei from pathology images is time-consuming because of the large number of nuclei an...

Spatially Constrained Context-Aware Hierarchical Deep Correlation Filters for Nucleus Detection in Histology Images.

Medical image analysis
Nucleus detection in histology images is a fundamental step for cellular-level analysis in computational pathology. In clinical practice, quantitative nuclear morphology can be used for diagnostic decision making, prognostic stratification, and treat...

DLBCL-Morph: Morphological features computed using deep learning for an annotated digital DLBCL image set.

Scientific data
Diffuse Large B-Cell Lymphoma (DLBCL) is the most common non-Hodgkin lymphoma. Though histologically DLBCL shows varying morphologies, no morphologic features have been consistently demonstrated to correlate with prognosis. We present a morphologic a...