AIMC Topic: Computational Biology

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The Emerging Role of Long Non-Coding RNAs and MicroRNAs in Neurodegenerative Diseases: A Perspective of Machine Learning.

Biomolecules
Neurodegenerative diseases (NDs) are characterized by progressive neuronal dysfunction and death of brain cells population. As the early manifestations of NDs are similar, their symptoms are difficult to distinguish, making the timely detection and d...

Interrogating theoretical models of neural computation with emergent property inference.

eLife
A cornerstone of theoretical neuroscience is the circuit model: a system of equations that captures a hypothesized neural mechanism. Such models are valuable when they give rise to an experimentally observed phenomenon -- whether behavioral or a patt...

bCNN-Methylpred: Feature-Based Prediction of RNA Sequence Modification Using Branch Convolutional Neural Network.

Genes
RNA modification is vital to various cellular and biological processes. Among the existing RNA modifications, N-methyladenosine (m6A) is considered the most important modification owing to its involvement in many biological processes. The prediction ...

Assessing the Adequacy of Hemodialysis Patients via the Graph-Based Takagi-Sugeno-Kang Fuzzy System.

Computational and mathematical methods in medicine
Maintenance hemodialysis is the main method for the treatment of end-stage renal disease in China. The / value is the gold standard of hemodialysis adequacy. However, / requires repeated blood drawing and evaluation; it is hard to monitor dialysis ad...

A Self-Representation-Based Fuzzy SVM Model for Predicting Vascular Calcification of Hemodialysis Patients.

Computational and mathematical methods in medicine
In end-stage renal disease (ESRD), vascular calcification risk factors are essential for the survival of hemodialysis patients. To effectively assess the level of vascular calcification, the machine learning algorithm can be used to predict the vascu...

Explaining distortions in metacognition with an attractor network model of decision uncertainty.

PLoS computational biology
Metacognition is the ability to reflect on, and evaluate, our cognition and behaviour. Distortions in metacognition are common in mental health disorders, though the neural underpinnings of such dysfunction are unknown. One reason for this is that mo...

i4mC-Deep: An Intelligent Predictor of N4-Methylcytosine Sites Using a Deep Learning Approach with Chemical Properties.

Genes
DNA is subject to epigenetic modification by the molecule N4-methylcytosine (4mC). N4-methylcytosine plays a crucial role in DNA repair and replication, protects host DNA from degradation, and regulates DNA expression. However, though current experim...

Highly accurate protein structure prediction for the human proteome.

Nature
Protein structures can provide invaluable information, both for reasoning about biological processes and for enabling interventions such as structure-based drug development or targeted mutagenesis. After decades of effort, 17% of the total residues i...