AI Medical Compendium Topic

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Sequence-to-function deep learning frameworks for engineered riboregulators.

Nature communications
While synthetic biology has revolutionized our approaches to medicine, agriculture, and energy, the design of completely novel biological circuit components beyond naturally-derived templates remains challenging due to poorly understood design rules....

Reconstructing lost BOLD signal in individual participants using deep machine learning.

Nature communications
Signal loss in blood oxygen level-dependent (BOLD) functional neuroimaging is common and can lead to misinterpretation of findings. Here, we reconstructed compromised fMRI signal using deep machine learning. We trained a model to learn principles gov...

A deep learning approach to programmable RNA switches.

Nature communications
Engineered RNA elements are programmable tools capable of detecting small molecules, proteins, and nucleic acids. Predicting the behavior of these synthetic biology components remains a challenge, a situation that could be addressed through enhanced ...

A global review of publicly available datasets for ophthalmological imaging: barriers to access, usability, and generalisability.

The Lancet. Digital health
Health data that are publicly available are valuable resources for digital health research. Several public datasets containing ophthalmological imaging have been frequently used in machine learning research; however, the total number of datasets cont...

SPOTONE: Hot Spots on Protein Complexes with Extremely Randomized Trees via Sequence-Only Features.

International journal of molecular sciences
Protein Hot-Spots (HS) are experimentally determined amino acids, key to small ligand binding and tend to be structural landmarks on protein-protein interactions. As such, they were extensively approached by structure-based Machine Learning (ML) pred...

LncLocation: Efficient Subcellular Location Prediction of Long Non-Coding RNA-Based Multi-Source Heterogeneous Feature Fusion.

International journal of molecular sciences
Recent studies uncover that subcellular location of long non-coding RNAs (lncRNAs) can provide significant information on its function. Due to the lack of experimental data, the number of lncRNAs is very limited, experimentally verified subcellular l...

Bruise dating using deep learning.

Journal of forensic sciences
The bruise dating can have important medicolegal implications in family violence and violence against women cases. However, studies show that the medical specialist has 50% accuracy in classifying a bruise by age, mainly due to the variability of the...

Assessing and mitigating the effects of class imbalance in machine learning with application to X-ray imaging.

International journal of computer assisted radiology and surgery
PURPOSE: Machine learning (ML) algorithms are well known to exhibit variations in prediction accuracy when provided with imbalanced training sets typically seen in medical imaging (MI) due to the imbalanced ratio of pathological and normal cases. Thi...