AIMC Topic: Gene Regulatory Networks

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Approach for the Definition of radiomiRNomic Signatures for Breast Cancer Differential Diagnosis.

International journal of molecular sciences
UNLABELLED: Personalized medicine relies on the integration and consideration of specific characteristics of the patient, such as tumor phenotypic and genotypic profiling.

The feasibility of developing biomarkers from peripheral blood mononuclear cell RNAseq data in children with juvenile idiopathic arthritis using machine learning approaches.

Arthritis research & therapy
BACKGROUND: The response to treatment for juvenile idiopathic arthritis (JIA) can be staged using clinical features. However, objective laboratory biomarkers of remission are still lacking. In this study, we used machine learning to predict JIA activ...

System-level responses to cisplatin in pro-apoptotic stages of breast cancer MCF-7 cell line.

Computational biology and chemistry
Cisplatin ceases cell division and induces apoptosis in cancer cell lines. It is well established that cisplatin alters the expression of many genes involved in several cellular processes and pathways including transcription, p53 signaling pathway, a...

ℓ-gain filter design of discrete-time positive neural networks with mixed delays.

Neural networks : the official journal of the International Neural Network Society
This paper mainly focuses on the filter design with ℓ-gain disturbance attenuation performance for a class of discrete-time positive neural networks. Discrete and distributed time-varying delays occurring in neuron transmission are taken into account...

Identification of genes of four malignant tumors and a novel prediction model development based on PPI data and support vector machines.

Cancer gene therapy
Triple-negative breast cancer (TNBC), colon adenocarcinoma (COAD), ovarian cancer (OV), and glioblastoma multiforme (GBM) are common malignant tumors, in which significant challenges are still faced in early diagnosis, treatment, and prognosis. There...

Pathway-Based Single-Cell RNA-Seq Classification, Clustering, and Construction of Gene-Gene Interactions Networks Using Random Forests.

IEEE journal of biomedical and health informatics
Single-cell RNA-Sequencing (scRNA-Seq), an advanced sequencing technique, enables biomedical researchers to characterize cell-specific gene expression profiles. Although studies have adapted machine learning algorithms to cluster different cell popul...

Predicting gene regulatory interactions based on spatial gene expression data and deep learning.

PLoS computational biology
Reverse engineering of gene regulatory networks (GRNs) is a central task in systems biology. Most of the existing methods for GRN inference rely on gene co-expression analysis or TF-target binding information, where the determination of co-expression...

From Discrete to Continuous Modeling of Lymphocyte Development and Plasticity in Chronic Diseases.

Frontiers in immunology
The molecular events leading to differentiation, development, and plasticity of lymphoid cells have been subject of intense research due to their key roles in multiple pathologies, such as lymphoproliferative disorders, tumor growth maintenance and c...

Network as a Biomarker: A Novel Network-Based Sparse Bayesian Machine for Pathway-Driven Drug Response Prediction.

Genes
With the advances in different biological networks including gene regulation, gene co-expression, protein-protein interaction networks, and advanced approaches for network reconstruction, analysis, and interpretation, it is possible to discover relia...