AIMC Topic: Mice

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Resolution-Adaptive Binning Enhances Machine Learning Modeling by Interbatch and Multiplatform Orbitrap-Based Shotgun Mass Spectrometry Data Integration.

Analytical chemistry
Machine learning (ML) modeling on mass spectrometry (MS)-based shotgun data facilitates feature selection and disease modeling. However, batch-specific models often struggle with limited transferability and generalizability, necessitating data integr...

Light-field deep learning enables high-throughput, scattering-mitigated calcium imaging.

Proceedings of the National Academy of Sciences of the United States of America
Light-field microscopy (LFM) enables high-throughput functional imaging by scanlessly encoding entire volumes in single snapshots. However, LFM's computational burden and vulnerability to scattering limit its application to biological imaging. We pre...

Integrated transcriptomics and proteomics reveal ferroptosis induced by B[a]P and BPDE in mouse hippocampal neurons.

Scientific reports
The environmental pollutant Benzo[a]pyrene (B[a]P) and its ultimate metabolite B[a]P-7,8-diol-9,10-epoxide (BPDE) exhibit neurotoxic effects, yet the underlying molecular mechanisms remain enigmatic. Recently, ferroptosis has emerged as a potential p...

Dimeric gold nanoparticles enable multiplexed labeling in cryoelectron tomography.

Proceedings of the National Academy of Sciences of the United States of America
Cryoelectron tomography (cryo-ET) enables three-dimensional visualization of molecular structures within tissue and intact cells, providing a powerful tool for studying the spatial organization of biological components at nanometer resolution. Realiz...

Interactions between long- and short-term synaptic plasticity transform temporal neural representations into spatial.

Proceedings of the National Academy of Sciences of the United States of America
Information processing in the brain relies on the transmission of spikes through chemical synapses whose efficacies often depend on their recent firing history. While effects of such short-term plasticity on neural information processing have long be...

Deep learning reveals how cells pull, buckle, and navigate fibrous environments.

Proceedings of the National Academy of Sciences of the United States of America
Cells in tissues navigate fibrous environments fundamentally differently than they do on flat substrates, but the establishment of cell forces in physiological fibrous settings remains poorly understood. Although factors such as the stiffness of the ...

FLASH: innovative integrated enzymatic-fluorescent labeling for automated muscle fiber typing, metabolic and morphometric analysis.

Skeletal muscle
BACKGROUND: Skeletal muscle is a dynamic tissue capable of structural and metabolic remodeling in response to physiological and pathological stimuli. These adaptations are central to understanding the mechanisms underlying conditions such as genetic ...

Machine learning-powered discovery of a novel berberine derivative inducing SCD-dependent ferroptosis in osteosarcoma.

Journal of translational medicine
BACKGROUND: Despite decades of therapeutic development, osteosarcoma survival remains poor. Although berberine (BBR) shows anti-tumor activity, its efficacy is limited. We addressed this through structural modification and machine learning-guided dis...

Identification of IL1R1 as a potential key PANoptosis-related gene in myocardial ischemia-reperfusion injury using machine learning.

Scientific reports
Myocardial ischemia-reperfusion injury (MIRI) involves multifaceted pathogenic mechanisms, including inflammatory responses, immune dysregulation, and emerging forms of programmed cell death such as PANoptosis. However, the precise regulatory genes l...

Construction of a Minimal Sensor Array Using Fingerprint Protein Corona on Nanostars for Detecting Protein Isoforms and Disease States.

ACS nano
Signature-based protein detection coupled with machine learning algorithms has revolutionized traditional sensing methods, providing rapid, inexpensive, and selectivity-driven detection without the use of specialized equipment. This strategy leverage...