AIMC Topic: Biomarkers, Tumor

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Capsule Network Based Modeling of Multi-omics Data for Discovery of Breast Cancer-Related Genes.

IEEE/ACM transactions on computational biology and bioinformatics
Breast cancer is one of the most common cancers all over the world, which bring about more than 450,000 deaths each year. Although this malignancy has been extensively studied by a large number of researchers, its prognosis is still poor. Since thera...

Application of a Neural Network Whole Transcriptome-Based Pan-Cancer Method for Diagnosis of Primary and Metastatic Cancers.

JAMA network open
IMPORTANCE: A molecular diagnostic method that incorporates information about the transcriptional status of all genes across multiple tissue types can strengthen confidence in cancer diagnosis.

Adaptive multi-view multi-label learning for identifying disease-associated candidate miRNAs.

PLoS computational biology
Increasing evidence has indicated that microRNAs(miRNAs) play vital roles in various pathological processes and thus are closely related with many complex human diseases. The identification of potential disease-related miRNAs offers new opportunities...

Learning Where to See: A Novel Attention Model for Automated Immunohistochemical Scoring.

IEEE transactions on medical imaging
Estimating over-amplification of human epidermal growth factor receptor 2 (HER2) on invasive breast cancer is regarded as a significant predictive and prognostic marker. We propose a novel deep reinforcement learning (DRL)-based model that treats imm...

LUADpp: an effective prediction model on prognosis of lung adenocarcinomas based on somatic mutational features.

BMC cancer
BACKGROUND: Lung adenocarcinoma is the most common type of lung cancers. Whole-genome sequencing studies disclosed the genomic landscape of lung adenocarcinomas. however, it remains unclear if the genetic alternations could guide prognosis prediction...

Gene Expression Classification of Lung Adenocarcinoma into Molecular Subtypes.

IEEE/ACM transactions on computational biology and bioinformatics
As one of the most common malignancies in the world, lung adenocarcinoma (LUAD) is currently difficult to cure. However, the advent of precision medicine provides an opportunity to improve the treatment of lung cancer. Subtyping lung cancer plays an ...

Prediction of survival outcomes in patients with epithelial ovarian cancer using machine learning methods.

Journal of gynecologic oncology
OBJECTIVES: The aim of this study was to develop a new prognostic classification for epithelial ovarian cancer (EOC) patients using gradient boosting (GB) and to compare the accuracy of the prognostic model with the conventional statistical method.

Deep learning can see the unseeable: predicting molecular markers from MRI of brain gliomas.

Clinical radiology
This paper describes state-of-the-art methods for molecular biomarker prediction utilising magnetic resonance imaging. This review paper covers both classical machine learning approaches and deep learning approaches to identifying the predictive feat...

Predicting breast tumor proliferation from whole-slide images: The TUPAC16 challenge.

Medical image analysis
Tumor proliferation is an important biomarker indicative of the prognosis of breast cancer patients. Assessment of tumor proliferation in a clinical setting is a highly subjective and labor-intensive task. Previous efforts to automate tumor prolifera...