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Genetic Predisposition to Disease

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Machine learning techniques for personalized breast cancer risk prediction: comparison with the BCRAT and BOADICEA models.

Breast cancer research : BCR
BACKGROUND: Comprehensive breast cancer risk prediction models enable identifying and targeting women at high-risk, while reducing interventions in those at low-risk. Breast cancer risk prediction models used in clinical practice have low discriminat...

Whole-genome deep-learning analysis identifies contribution of noncoding mutations to autism risk.

Nature genetics
We address the challenge of detecting the contribution of noncoding mutations to disease with a deep-learning-based framework that predicts the specific regulatory effects and the deleterious impact of genetic variants. Applying this framework to 1,7...

Gene pathogenicity prediction of Mendelian diseases via the random forest algorithm.

Human genetics
The study of Mendelian diseases and the identification of their causative genes are of great significance in the field of genetics. The evaluation of the pathogenicity of genes and the total number of Mendelian disease genes are both important questi...

An ensemble learning method for asthma control level detection with leveraging medical knowledge-based classifier and supervised learning.

Journal of medical systems
Approximately 300 million people are afflicted with asthma around the world, with the estimated death rate of 250,000 cases, indicating the significance of this disease. If not treated, it can turn into a serious public health problem. The best metho...

Prediction of Long Non-Coding RNAs Based on Deep Learning.

Genes
With the rapid development of high-throughput sequencing technology, a large number of transcript sequences have been discovered, and how to identify long non-coding RNAs (lncRNAs) from transcripts is a challenging task. The identification and inclus...

Adaptive multi-view multi-label learning for identifying disease-associated candidate miRNAs.

PLoS computational biology
Increasing evidence has indicated that microRNAs(miRNAs) play vital roles in various pathological processes and thus are closely related with many complex human diseases. The identification of potential disease-related miRNAs offers new opportunities...

iMEGES: integrated mental-disorder GEnome score by deep neural network for prioritizing the susceptibility genes for mental disorders in personal genomes.

BMC bioinformatics
BACKGROUND: A range of rare and common genetic variants have been discovered to be potentially associated with mental diseases, but many more have not been uncovered. Powerful integrative methods are needed to systematically prioritize both variants ...

Dual Convolutional Neural Network Based Method for Predicting Disease-Related miRNAs.

International journal of molecular sciences
Identification of disease-related microRNAs (disease miRNAs) is helpful for understanding and exploring the etiology and pathogenesis of diseases. Most of recent methods predict disease miRNAs by integrating the similarities and associations of miRNA...

PBMDR: A particle swarm optimization-based multifactor dimensionality reduction for the detection of multilocus interactions.

Journal of theoretical biology
Studies on multilocus interactions have mainly investigated the associations between genetic variations from the related genes and histopathological tumor characteristics in patients. However, currently, the identification and characterization of sus...