AIMC Topic: Algorithms

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Enhancing Top-Down Proteomics Data Analysis by Combining Deconvolution Results through a Machine Learning Strategy.

Journal of the American Society for Mass Spectrometry
Top-down mass spectrometry (MS) is a powerful tool for the identification and comprehensive characterization of proteoforms arising from alternative splicing, sequence variation, and post-translational modifications. However, the complex data set gen...

Top-down machine learning approach for high-throughput single-molecule analysis.

eLife
Single-molecule approaches provide enormous insight into the dynamics of biomolecules, but adequately sampling distributions of states and events often requires extensive sampling. Although emerging experimental techniques can generate such large dat...

DeepDose: Towards a fast dose calculation engine for radiation therapy using deep learning.

Physics in medicine and biology
We present DeepDose, a deep learning framework for fast dose calculations in radiation therapy. Given a patient anatomy and linear-accelerator IMRT multi-leaf-collimator shape or segment, a novel set of physics-based inputs is calculated that encode ...

MicrographCleaner: A python package for cryo-EM micrograph cleaning using deep learning.

Journal of structural biology
Cryo-EM Single Particle Analysis workflows require tens of thousands of high-quality particle projections to unveil the three-dimensional structure of macromolecules. Conventional methods for automatic particle picking tend to suffer from high false-...

A Novel Deep Neural Network for Robust Detection of Seizures Using EEG Signals.

Computational and mathematical methods in medicine
The detection of recorded epileptic seizure activity in electroencephalogram (EEG) segments is crucial for the classification of seizures. Manual recognition is a time-consuming and laborious process that places a heavy burden on neurologists, and he...

A tight upper bound on the generalization error of feedforward neural networks.

Neural networks : the official journal of the International Neural Network Society
We give a tight upper bound on the generalization error of 2-times continuously differentiable feedforward neural networks if the loss function is 2-times continuously differentiable as well. The upper bound consists of two terms, the first term indi...

Biohorology and biomarkers of aging: Current state-of-the-art, challenges and opportunities.

Ageing research reviews
The aging process results in multiple traceable footprints, which can be quantified and used to estimate an organism's age. Examples of such aging biomarkers include epigenetic changes, telomere attrition, and alterations in gene expression and metab...

Improving energy expenditure estimates from wearable devices: A machine learning approach.

Journal of sports sciences
A means of quantifying continuous, free-living energy expenditure (EE) would advance the study of bioenergetics. The aim of this study was to apply a non-linear, machine learning algorithm (random forest) to predict minute level EE for a range of act...

Topics and trends in artificial intelligence assisted human brain research.

PloS one
Artificial intelligence (AI) assisted human brain research is a dynamic interdisciplinary field with great interest, rich literature, and huge diversity. The diversity in research topics and technologies keeps increasing along with the tremendous gro...

Application of Generalized Split Linearized Bregman Iteration algorithm for Alzheimer's disease prediction.

Aging
In this paper, we applied a novel method for the detection of Alzheimer's disease (AD) based on a structural magnetic resonance imaging (sMRI) dataset. Specifically, the method involved a new classification algorithm of machine learning, named Genera...