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Genetic Predisposition to Disease

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Identifying patients with familial hypercholesterolemia using data mining methods in the Northern Great Plain region of Hungary.

Atherosclerosis
BACKGROUND AND AIMS: Familial hypercholesterolemia (FH) is one of the most frequent diseases with monogenic inheritance. Previous data indicated that the heterozygous form occurred in 1:250 people. Based on these reports, around 36,000-40,000 people ...

Gene prioritization using Bayesian matrix factorization with genomic and phenotypic side information.

Bioinformatics (Oxford, England)
MOTIVATION: Most gene prioritization methods model each disease or phenotype individually, but this fails to capture patterns common to several diseases or phenotypes. To overcome this limitation, we formulate the gene prioritization task as the fact...

Multiobjective multifactor dimensionality reduction to detect SNP-SNP interactions.

Bioinformatics (Oxford, England)
MOTIVATION: Single-nucleotide polymorphism (SNP)-SNP interactions (SSIs) are popular markers for understanding disease susceptibility. Multifactor dimensionality reduction (MDR) can successfully detect considerable SSIs. Currently, MDR-based methods ...

The Association Between Bisphenol A and Polycystic Ovarian Syndrome: A Case-Control Study.

Acta medica Iranica
Polycystic ovarian syndrome (PCOS) is an endocrine metabolic disorder with unclear etiopathogenesis among reproductive age women. Evidences show genetic susceptibility and environmental factors were associated with PCOS. The aim of this study was to ...

Machine Learning-Based Gene Prioritization Identifies Novel Candidate Risk Genes for Inflammatory Bowel Disease.

Inflammatory bowel diseases
BACKGROUND: The inflammatory bowel diseases (IBDs) are chronic inflammatory disorders, associated with genetic, immunologic, and environmental factors. Although hundreds of genes are implicated in IBD etiology, it is likely that additional genes play...

Effect of Aggregation Operators on Network-Based Disease Gene Prioritization: A Case Study on Blood Disorders.

IEEE/ACM transactions on computational biology and bioinformatics
Owing to the innate noise in the biological data sources, a single source or a single measure do not suffice for an effective disease gene prioritization. So, the integration of multiple data sources or aggregation of multiple measures is the need of...

The effectiveness of argumentation in tutorial dialogues with an Intelligent Tutoring System for genetic risk of breast cancer.

Behavior research methods
BRCA Gist is an Intelligent Tutoring System that helps women understand issues related to genetic testing and breast cancer risk. In two laboratory experiments and a field experiment with community and web-based samples, an avatar asked 120 participa...

ASSOCIATION BETWEEN MURINE DOUBLE MINUTE 2 - T309G polymorphism and recurrence of hepatocellular carcinoma after surgical treatment.

Arquivos de gastroenterologia
BACKGROUND: Discovery and incorporation of biomarker panels to cancer studies enabled the understanding of genetic variation and its interference in carcinogenesis at molecular level. The potential association between single nucleotide polymorphism (...

Using structural MRI to identify individuals at genetic risk for bipolar disorders: a 2-cohort, machine learning study.

Journal of psychiatry & neuroscience : JPN
BACKGROUND: Brain imaging is of limited diagnostic use in psychiatry owing to clinical heterogeneity and low sensitivity/specificity of between-group neuroimaging differences. Machine learning (ML) may better translate neuroimaging to the level of in...