AIMC Topic: Transcriptome

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Genetic features for drug responses in cancer - Investigating an ensemble-feature-selection approach.

Computers in biology and medicine
Predicting drug responses using genetic and transcriptomic features is crucial for enhancing personalized medicine. In this study, we implemented an ensemble of machine learning algorithms to analyze the correlation between genetic and transcriptomic...

Signature gene expression model for quantitative evaluation of MASH-like liver injury in mice.

Toxicology and applied pharmacology
Metabolic dysfunction-associated steatotic liver disease (MASLD) is a spectrum of chronic pathologic conditions strongly associated with metabolic syndrome and affects approximately 38 % of the global population. Untreated MASLD may progress to metab...

Role of machine learning in molecular pathology for breast cancer: A review on gene expression profiling and RNA sequencing application.

Critical reviews in oncology/hematology
INTRODUCTION: Breast cancer is the most prevalent cancer among women, with growing incidence and mortality rates. Regardless of remarkable progress in cancer research, breast cancer remains a major concern due to its complex nature. These factors und...

The Role of HbA1c in Parkinson's Disease: An Integrative Analysis by Single-Cell, Bulk Transcriptome and Mendelian Randomization.

Molecular neurobiology
Decreased glucose tolerance is recognized as a factor associated with Parkinson's disease (PD) progression, yet the relationship between HbA1c and PD prognosis remains insufficiently explored. Using data from the Integrated Epidemiological Unit (IEU)...

Transcriptome analysis and machine learning methods reveal potential mechanisms of zebrafish muscle aging.

Comparative biochemistry and physiology. Part D, Genomics & proteomics
Muscle is one of the most abundant tissues in the human body, and its aging usually leads to many adverse consequences. Zebrafish is a powerful model used to study human muscle diseases, yet we know little about the molecular mechanisms of muscle agi...

Identification of Npas4 as a biomarker for CICI by transcriptomics combined with bioinformatics and machine learning approaches.

Experimental neurology
Chemotherapy is one of the most successful strategies for treating cancer. Unfortunately, up to 70 % of cancer survivors develop cognitive impairment during or after chemotherapy, which severely affects their quality of life. We first established a m...

Deciphering the transcriptomic characteristic of lactate metabolism and the immune infiltration landscape in abdominal aortic aneurysm.

Biochemical and biophysical research communications
BACKGROUND: Abdominal aortic aneurysm (AAA) is a common degenerative vascular disease characterized by progressive dilation of the abdominal aorta, which poses a life-threatening risk upon rupture. Lactate, a key metabolic byproduct and immunomodulat...

Interspecies predictions of growth traits from quantitative transcriptome data acquired during fruit development.

Journal of experimental botany
Linking genotype and phenotype is a fundamental challenge in biology. In this respect, machine learning is playing a pivotal role in systems biology. As central phenotypic traits, fruit development and relative growth rate (RGR) result from interacti...

Hub biomarkers and their clinical relevance in glycometabolic disorders: A comprehensive bioinformatics and machine learning approach.

Chinese medical journal
BACKGROUND: Gluconeogenesis is a critical metabolic pathway for maintaining glucose homeostasis, and its dysregulation can lead to glycometabolic disorders. This study aimed to identify hub biomarkers of these disorders to provide a theoretical found...

Prediction of treatment efficacy in the suanzaoren decoction and estazolam for chronic insomnia disorder, along with brain function and cognitive changes before and after treatment, and potential gene expression profiles.

Asian journal of psychiatry
OBJECTIVE: This study compared the brain function changes in chronic insomnia disorder (CID) before and after treatment by suanzaoren decoction (SZRD) and estazolam, to reveal their effects in cognition improvement, and to explore the potential genet...