AIMC Topic: Imaging, Three-Dimensional

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CT male pelvic organ segmentation using fully convolutional networks with boundary sensitive representation.

Medical image analysis
Accurate segmentation of the prostate and organs at risk (e.g., bladder and rectum) in CT images is a crucial step for radiation therapy in the treatment of prostate cancer. However, it is a very challenging task due to unclear boundaries, large intr...

Deep convolutional neural network for segmentation of thoracic organs-at-risk using cropped 3D images.

Medical physics
PURPOSE: Automatic segmentation of organs-at-risk (OARs) is a key step in radiation treatment planning to reduce human efforts and bias. Deep convolutional neural networks (DCNN) have shown great success in many medical image segmentation application...

Incorporating prior knowledge via volumetric deep residual network to optimize the reconstruction of sparsely sampled MRI.

Magnetic resonance imaging
For sparse sampling that accelerates magnetic resonance (MR) image acquisition, non-linear reconstruction algorithms have been developed, which incorporated patient specific a prior information. More generic a prior information could be acquired via ...

Automatic segmentation of bone surfaces from ultrasound using a filter-layer-guided CNN.

International journal of computer assisted radiology and surgery
PURPOSE: Ultrasound (US) provides real-time, two-/three-dimensional safe imaging. Due to these capabilities, it is considered a safe alternative to intra-operative fluoroscopy in various computer-assisted orthopedic surgery (CAOS) procedures. However...

Deep convolutional neural networks for segmenting 3D in vivo multiphoton images of vasculature in Alzheimer disease mouse models.

PloS one
The health and function of tissue rely on its vasculature network to provide reliable blood perfusion. Volumetric imaging approaches, such as multiphoton microscopy, are able to generate detailed 3D images of blood vessels that could contribute to ou...

Multi-organ segmentation of the head and neck area: an efficient hierarchical neural networks approach.

International journal of computer assisted radiology and surgery
PURPOSE: In radiation therapy, a key step for a successful cancer treatment is image-based treatment planning. One objective of the planning phase is the fast and accurate segmentation of organs at risk and target structures from medical images. Howe...

Scaled Subprofile Modeling and Convolutional Neural Networks for the Identification of Parkinson's Disease in 3D Nuclear Imaging Data.

International journal of neural systems
Over the last years convolutional neural networks (CNNs) have shown remarkable results in different image classification tasks, including medical imaging. One area that has been less explored with CNNs is Positron Emission Tomography (PET). Fluorodeo...

Simultaneous spatiotemporal tracking and oxygen sensing of transient implants in vivo using hot-spot MRI and machine learning.

Proceedings of the National Academy of Sciences of the United States of America
A varying oxygen environment is known to affect cellular function in disease as well as activity of various therapeutics. For transient structures, whether they are unconstrained therapeutic transplants, migrating cells during tumor metastasis, or ce...

DeepCEST: 9.4 T Chemical exchange saturation transfer MRI contrast predicted from 3 T data - a proof of concept study.

Magnetic resonance in medicine
PURPOSE: To determine the feasibility of employing the prior knowledge of well-separated chemical exchange saturation transfer (CEST) signals in the 9.4 T Z-spectrum to separate overlapping CEST signals acquired at 3 T, using a deep learning approach...