AIMC Topic: Cell Membrane

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Novel machine learning application for prediction of membrane insertion potential of cell-penetrating peptides.

International journal of pharmaceutics
Cell-penetrating peptides (CPPs) are often used as transporter systems to deliver various therapeutic agents into the cell. We developed a novel machine learning application which can quantitatively screen the insertion/interaction potential of vario...

Automated segmentation of cell membranes to evaluate HER2 status in whole slide images using a modified deep learning network.

Computers in biology and medicine
The uncontrollable growth of cells in the breast tissue causes breast cancer which is the second most common type of cancer affecting women in the United States. Normally, human epidermal growth factor receptor 2 (HER2) proteins are responsible for t...

Identification of clathrin proteins by incorporating hyperparameter optimization in deep learning and PSSM profiles.

Computer methods and programs in biomedicine
BACKGROUND AND OBJECTIVES: Clathrin is an adaptor protein that serves as the principal element of the vesicle-coating complex and is important for the membrane cleavage to dispense the invaginated vesicle from the plasma membrane. The functional loss...

Machine Learning Based Real-Time Image-Guided Cell Sorting and Classification.

Cytometry. Part A : the journal of the International Society for Analytical Cytology
Cell classification based on phenotypical, spatial, and genetic information greatly advances our understanding of the physiology and pathology of biological systems. Technologies derived from next generation sequencing and fluorescent activated cell ...

Levels and building blocks-toward a domain granularity framework for the life sciences.

Journal of biomedical semantics
BACKGROUND: With the emergence of high-throughput technologies, Big Data and eScience, the use of online data repositories and the establishment of new data standards that require data to be computer-parsable become increasingly important. As a conse...

Hindmarsh-Rose neuron model with memristors.

Bio Systems
We analyze single and coupled Hindmarsh-Rose neurons in the presence of a time varying electromagnetic field which results from the exchange of ions across the membrane. Memristors are used to model the relation between magnetic flux of the electroma...

Cell-Like Micromotors.

Accounts of chemical research
In the past decade, versatile micro- and nanosized machines have emerged as active agents for large-scale detoxification, sensing, microfabrication, and many other promising applications. Micromachines have also been envisioned as the next advancemen...

Classifying the molecular functions of Rab GTPases in membrane trafficking using deep convolutional neural networks.

Analytical biochemistry
Deep learning has been increasingly used to solve a number of problems with state-of-the-art performance in a wide variety of fields. In biology, deep learning can be applied to reduce feature extraction time and achieve high levels of performance. I...

Biosynthesis of copper nanoparticles using Shewanella loihica PV-4 with antibacterial activity: Novel approach and mechanisms investigation.

Journal of hazardous materials
Metallic nanoparticle based disinfection represents a promising approach for microbial pollution control in drinking water and thus, biosynthesis of non precious metal nanoparticles is of considerable interest. Herein, an original and efficient route...