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Signal Transduction

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Identification of transcription factors that may reprogram lung adenocarcinoma.

Artificial intelligence in medicine
BACKGROUND: Lung adenocarcinoma is one of most threatening disease to human health. Although many efforts have been devoted to its genetic study, few researches have been focused on the transcription factors which regulate tumor initiation and progre...

Analysis of cancer-related lncRNAs using gene ontology and KEGG pathways.

Artificial intelligence in medicine
BACKGROUND: Cancer is a disease that involves abnormal cell growth and can invade or metastasize to other tissues. It is known that several factors are related to its initiation, proliferation, and invasiveness. Recently, it has been reported that lo...

A system of recurrent neural networks for modularising, parameterising and dynamic analysis of cell signalling networks.

Bio Systems
In this paper, we show how to extend our previously proposed novel continuous time Recurrent Neural Networks (RNN) approach that retains the advantage of continuous dynamics offered by Ordinary Differential Equations (ODE) while enabling parameter es...

Basic fibroblast growth factor is critical to reprogramming buffalo (Bubalus bubalis) primordial germ cells into embryonic germ stem cell-like cells.

Theriogenology
Primordial germ cells (PGCs) are destined to form gametes in vivo, and they can be reprogrammed into pluripotent embryonic germ (EG) cells in vitro. Buffalo PGC have been reported to be reprogrammed into EG-like cells, but the identities of the major...

Spatial dispersal of bacterial colonies induces a dynamical transition from local to global quorum sensing.

Physical review. E
Bacteria communicate using external chemical signals called autoinducers (AI) in a process known as quorum sensing (QS). QS efficiency is reduced by both limitations of AI diffusion and potential interference from neighboring strains. There is thus a...

Predictive diagnosis of major depression using NMR-based metabolomics and least-squares support vector machine.

Clinica chimica acta; international journal of clinical chemistry
BACKGROUND: Major depressive (MD) disorder is a serious psychiatric disorder that can result in suicidal behavior if not treated. The MD diagnosis using a standardized instrument instead of a structured interview will be advantageous for treatment an...

The method for breast cancer grade prediction and pathway analysis based on improved multiple kernel learning.

Journal of bioinformatics and computational biology
Breast cancer histologic grade represents the morphological assessment of the tumor's malignancy and aggressiveness, which is vital in clinically planning treatment and estimating prognosis for patients. Therefore, the prediction of breast cancer gra...